Identification of Replication Protein by Nanoelectrospray Time-of-Flight Mass Spectrometry March 5, 2020 AccuTOF™ LC, Application Note, Mass Spectrometry (MS) 0 Introduction Nanoelectrospray (nanoESI) has become a powerful tool in bioanalytics and is now used as a routine analytical method1. The advantages of nanoelectrospray as compared to conventional electrospray (ESI) include very low flow rate and more tolerance toward salt contamination in the analyte solution2. Thus, a few μL of analyte solution suffice for extended mass spectrometric studies. This applications report demonstrates the use of nanoESI for protein identification. A commercially available replication protein A3 is in-gel digested with trypsin and desalted with ZipTip C18 tip. The analysis is performed using nanoESI coupled with the AccuTOF™ time-of-flight MS system to obtain the peptide fingerprint followed by a database search with ProFound3 software. Experimental The protein sample A3 was trypsin in-gel digested and extracted with the buffer solution containing 40 mM ammonium bicarbonate, 50% acetonitrile and 0.1 % TFA, and then dried using SpeedVac. The dried peptides were reconstituted with 0.1 % formic acid solution and desalted with ZipTip C18 tip and eluted with 10 µL acetonitrile/0.1% formic acid solution (50/50). 2 µL of the eluent was applied to the spray needle (New Objective). For full details: Attached files often contain the full content of the item you are viewing. Be sure and view any attachments. Nanoelectrospray.pdf 235.18 KB Related Articles Non-targeted analysis of electronics waste by comprehensive two-dimensional gas chromatography combined with high-resolution mass spectrometry: Using accurate mass information and mass defect analysis to explore the data Comprehensive two-dimensional gas chromatography (GC×GC) and high-resolution mass spectrometry (HRMS) offer the best possible separation of their respective techniques. Recent commercialization of combined GC×GC–HRMS systems offers new possibilities for the analysis of complex mixtures. However, such experiments yield enormous data sets that require new informatics tools to facilitate the interpretation of the rich information content. This study reports on the analysis of dust obtained from an electronics recycling facility by using GC×GC in combination with a new high-resolution time-of-flight (TOF) mass spectrometer. New software tools for (non-traditional) Kendrick mass defect analysis were developed in this research and greatly aided in the identification of compounds containing chlorine and bromine, elements that feature in most persistent organic pollutants (POPs). In essence, the mass defect plot serves as a visual aid from which halogenated compounds are recognizable on the basis of their mass defect and isotope patterns. Mass chromatograms were generated based on specific ions identified in the plots as well as region of the plot predominantly occupied by halogenated contaminants. Tentative identification was aided by database searches, complementary electron-capture negative ionization experiments and elemental composition determinations from the exact mass data. These included known and emerging flame retardants, such as polybrominated diphenyl ethers (PBDEs), hexabromobenzene, tetrabromo bisphenol A and tris (1-chloro-2-propyl) phosphate (TCPP), as well as other legacy contaminants such as polychlorinated biphenyls (PCBs) and polychlorinated terphenyls (PCTs). A new method for pesticides identification: fast GC/time-of-flight mass spectrometry Pesticides have been widely used all over the world. Although the use of pesticides is strictly regulated in many countries, laboratories still monitor their residues due to their toxicity and highly persistent nature. The most common method for pesticides identification is GC/MS with select ion monitoring (SIM). Since most of samples contain many different components, a long GC separation is generally needed when a low-resolution SIM MS is used. This is very time-consuming. Fast GC has been available for several years; however, the combination of fast GC with mass spectrometry had not been commercially available until high acquisition rate time-of-flight mass spectrometry was introduced. Here, we describe a new method by using fast GC/time-of-flight MS to identify 67 pesticides. The high resolution time-of-flight MS always yields high quality library searchable spectrums without compromising the sensitivity. The method is simple, fast, and reliable. Analysis of Electronics Waste by GCxGC Combined with High-resolution Mass Spectrometry: Using Accurate Mass Information and Mass Defect Analysis to Explore the Data Comprehensive two-dimensional gas chromatography (GCxGC) in combination with high-resolution mass spectrometry (HRMS) is a powerful tool for the analysis of complex mixtures. However, new software tools are required to facilitate the interpretation of the rich information content in GCxGC/HRMS data sets. In this work, we analyzed a dust sample collected from an electronics recycling facility by using GCxGC in combination with a new high-resolution time-of-flight (TOF) mass spectrometer. Nontraditional Kendrick Mass Defect (KMD) plots were used to identify halogenated contaminants in an electronics waste sample. Database search results combined with elemental composition determinations from exact-mass data were used to identify (potential) persistent organic pollutants (POPs). Structural Characterization of Polymers by MALDI Spiral- TOF Mass Spectrometry Combined with Kendrick Mass Defect Analysis High-resolution mass spectrometry (HRMS) continues to play an important role in the compositional characterization of larger organic molecules. In the field of polymer characterization, however, the application of HRMS has made only slow progress because of lower compatibility between matrix-assisted laser desorption/ionization (MALDI) and ultrahigh-resolution Fourier transform ion cyclotron resonance mass spectrometry (FT-ICRMS). In this study, a newly developed type of MALDI high-resolution time-of-flight mass spectrometry (TOFMS) with a spiral ion trajectory (MALDI spiral-TOFMS) was applied to the structural and compositional characterization of polymers. To create a graphical distribution of polymer components on a two-dimensional plot converted from complex mass spectra, we adopted a slightly modified Kendrick mass defect (KMD) analysis based on accurate masses determined using spiral-TOFMS. By setting the Kendrick mass scale based on the mass of the repeating units of a given polymer, components with common repeat units lined up in the horizontal direction on the KMD plot, whereas those components with different structures were shifted vertically. This combination of MALDI spiral-TOFMS measurement and KMD analysis enabled the successful discrimination of the polymer components in a blend of poly(alkylene oxide)s, the compositional analysis of poly(ethylene oxide)/poly(propylene oxide) block copolymers, and profiling of the end-group distribution of poly(ε- caprolactone)s synthesized under different conditions. Identification of LSD by AccuTOFTM LC/Time-of-Flight Mass Spectrometry Lysergic acid diethylamide (LSD) is a psychoactive drug with a long history of abuse. It is one of the most difficult drugs of abuse to detect in urine since the parent drug is excreted at very low concentration. Less than 1% of the ingested LSD dose is eliminated unchanged [1]. Analysis is further complicated because the isomeric compound iso-LSD, N-n-propylamide (LAMPA), which is itself a controlled drug, has a virtually identical mass spectrum [2]. Several GC/MS or GC/MS/MS methods have been developed for confirmation of LSD in urine, but a tedious and unstable derivatization procedure is required. The use of LC/MS for the analysis of LSD does not require derivatization of the analytes, thus simplifying the procedure. This application note demonstrates the feasibility by using the AccuTOF™ LC/MS for identification of LSD and related compounds. Additional method development and validation may be required for routine analysis. LC/MS: Identification of Unknowns by Combining Exact Mass Measurement with the NIST 02 Mass Spectral Database Similarity Search Electrospray ionization (ESI) and atmospheric pressure chemical ionization (APCI) tend to produce mass spectra with minimal fragmentation. Positive-ion mass spectra are dominated by protonated molecules and cation attachment, while negative-ion mass spectra usually show molecular anions or ions produced by hydride abstraction. However, by varying the potentials in the atmospheric pressure interface, collision-induced dissociation (CID) can produce mass spectra with extensive fragmentation. This is sometimes referred to as in-source CID. Because the ionization process and ion energies are different for ESI or APCI compared to electron ionization (EI), the fragmentation is often different from the EI mass spectra in common mass spectral databases. Furthermore, the fragmentation pattern can vary depending on in-source CID conditions. This leads one to question whether there is any value to searching an EI mass spectral database for ESI or APCI mass spectra. The NIST 02 Mass Spectral Search software provides functions for a structure similarity search. This search can be used to search the library for compounds with similar structures based on neutral losses, which is a more suitable method for searching ESI or APCI mass spectra against the library. Compounds that have mass spectra in the library database can often be identified from the search results. The similarity search can provide structural information about compounds that do not have mass spectra in the library by displaying the structures of similar compounds identified by the search. Showing 0 Comment Comments are closed.