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Structure Elucidation of Fluorinated Compounds by NMR

Introduction

  • Fluorine is increasingly being used in many new drugs
    • As of 2011 there were approximately 200 fluorine containing drugs. [ref 1]
    • Fluoro-organic compounds account for 40% of the new chemical entities entering phase III trials in 2012 and 2013. [ref 2]
    • Fluorine is use in a wide range of drug applications including: Anesthetics, Antacids, Anti-anxiety, Antibiotics, Antidepressants, Anti-fungal antibiotics, Antihistamines, Antilipemics, Anti-malarial, Antimetabolites, Appetite suppressants, Arthritis/anti-inflammatory agents, Psychotropic, Steroids/anti-inflammatory agents. [ref 3]
  • Fluorine is now appearing in illicit and illegal synthetic drugs:
    • These include: Cannabinoids [ref 4], and psychedelic phenethylamines [ref 5]
  • Fluoro Polymers are important to everyday life, for example PTFE (Teflon™)

Challenges

  • The potential Fluorine chemical shift range is 500 ppm, 188 kHz at 9.4T (1H 400 MHz) to 282 kHz at 14.1T (1H 600 MHz).
  • 19F-1H j coupling constants up to 60 Hz
  • 19F-13C j coupling constants up to 280 Hz
  • 19F long range J coupling interactions complicate NMR spectra making interpretation difficult
  • These spectral features combine to make 19F difficult to excite and to decouple from other nuclei.
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