Analytical Instruments Documents


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Documentation in support of your JEOL product.

JMS-T200GC msFineAnalysis Brochure

For qualitative analysis of High Resolution GC Mass Spec data, JEOL has developed msFineAnalysis software that integrates both EI and soft ionization data (GC/CI, PI, FI) with library search, exact mass, and isotope data. The software compares molecular formula information acquired from the NIST library search with soft ionization exact mass data analysis to ensure accurate qualitative results. It automatically examines the NIST library search results, reduces the possibility of false positive identifications, and selects the correct components from multiple candidates with similar scores. For unknown components not registered in the NIST libraries, it estimates molecular formulas by using the soft ionization data, acquires partial structure information and estimates structural formulas by using the EI data. msFineAnalysis takes qualitative GC-MS analysis to a whole new level, and is a major addition to the capabilities of our AccuTOF-GCx-plus

GC-MS Analysis of Cocoa Butter Triglycerides

Cocoa butter is the edible fat extracted from cocoa beans that is used in the manufacture of chocolate. Cocoa Butter Equivalents (CBE) are a substance derived from palm oil and shea butter that are used as a substitute for cocoa butter in chocolate. European regulations govern the labeling of chocolate as containing CBE less than 5%. US regulations require that Cocoa Butter Equivalents be specifically labeled with wording such as “chocolate flavored” coating. Analysis of the triglyceride content of chocolate is a quality control measure. Analysis of a standard sample of cocoa butter triglycerides is presented here as an example of the use of the JEOL Q1500 quadrupole GC-MS system for the detection of lipids separated by using a high-temperature GC column (Restek Rtx-65TG).

Integrated Analysis of Fatty Acid Methyl Esters using msFineAnalysis v2 - MSTips 301

Fatty acid methyl esters (FAMEs) are crucial for determining the fat content in food. Being environmentally friendly, they are also increasingly used as bio-diesel fuels. Many of the FAMEs are unsaturated with double bonds in the alkyl chains. As the number of double bonds increases (more unsaturation), the EI measurements tend to lack molecular ions. In this work, we measured a standard sample containing multiple FAMEs using EI and FI to detect their molecular ions. The resulting data was further examined by using msFineAnalysis to produce an integrated report for these compounds in which the library database search was combined with the molecular ion exact mass analysis to produce a qualitative identification of these compounds.

Integrated Analysis of Coffee Aroma by using a Headspace GC-HRMS - MSTips 280

Electron ionization (EI) is a hard ionization method that is commonly used with gas chromatography mass spectrometry (GC-MS). The mass spectral fragmentation patterns produced by EI are used for library database searches to identify compounds. Conversely, soft ionization methods like field ionization (FI) tend to produce clear molecular ions with minimal fragmentation. When high-resolution MS is used with these ionization techniques, the accurate masses for the fragment ions produced by EI and the molecular ions produced by soft ionization provide an additional dimension of information for the analytes. Combining the exact mass information with the results of conventional library search can enhance the accuracy of identification compared to the use of library search alone.  In this work, we introduce the msFineAnalysis software and use it to automatically combine data acquired by GC/EI and GC/soft ionization for the qualitative analysis of coffee headspace.

Integrated Analysis of an Acrylic Resin using msFineAnalysis v2 - MSTips 300

In 2018, msFineAnalysis Ver.1 software was released in which data acquired by EI, soft ionization, and accurate mass measurements were automatically integrated to generate a qualitative report for samples measured by these techniques with GC-MS. Recently, msFineAnalysis Ver.2 was introduced as an enhanced version with additional features. In this work, we will describe the changes in Ver.2, which now includes chromatographic deconvolution, and present applications using the new features.

Analyzing a Specific Component using Group Analysis of msFineAnalysis Ver. 2 - MSTips 303

In 2018, we announced the msFineAnalysis software which was designed to automatically integrate two types of data acquired by EI and soft ionization. Recently, we developed msFineAnalysis Version 2, an enhanced version with additional features. msFineAnalysis Version 2 incorporates two new features: Chromatographic Deconvolution and Group Analysis. In this work, we use the group analysis capabilities of the software to evaluate the pyrolysis GC-MS results for a vinyl acetate resin.

Flavones and Flavor Components in Two Basil Leaf Chemotypes

The chemical composition of herbs and spices can vary dramatically between different species and different growing conditions. Herbs grown under different conditions that have different essential oil compositions are referred to as chemotypes. Basil is an herb that has widely varying chemotypes. The difference between basil leaves from two different sources was easily observed by using DART. A leaf from a basil plant purchased at a grocery store was compared with a leaf from a Vietnamese restaurant. A small particle from each leaf was analyzed placed in front of the DART source. Mass spectra were obtained within seconds. Elemental compositions were confirmed by exact masses and accurate isotopic abundance measurements.

Direct Analysis in Real Time (DART®) Mass Spectrometry

Mass Spectrometry (MS) is one of the fastest-growing areas in analytical instrumentation. The use of mass spectrometry in support of synthetic, organic, and pharmaceutical chemistry is well established. Mass spectrometry is also used in materials science, environmental research, and forensic chemistry. It has also evolved into one of the core methods used in biotechnology. However, currently available ion sources place extreme restrictions on the speed and convenience of sample analysis by mass spectrometry. Here we report a method for using mass spectrometry to instantaneously analyze gases, liquids, and solids in open air at ground potential under ambient conditions. Traditional ion sources used in mass spectrometry require the introduction of samples into a high vacuum system.

Structural Analysis of Triacylglycerols by Using a MALDI-TOF/TOF System with Monoisotopic Precursor Selection

A new MALDI-TOF/TOF system with monoisotopic precursor selection was applied to the analysis of triacylglycerols in an olive oil sample. Monoisotopic precursor selection made it possible to obtain product-ion mass spectra without interference from species that differed by a single double bond. Complete structure determination of all triacylglycerols, including structural isomers, was made possible by interpreting the charge-remote fragmentation resulting from high-energy collision-induced dissociation (CID) of the sodiated triacylglycerols.

Other Resources

The following resources are available for the JEOL Analytical Instruments:


Corona - Glow Discharge (DART Ion Source)

February 22, 2020