JEOL Resources

Documentation in support of your JEOL product.

Oil Fingerprinting: Biomarker Identification in Oil and Sediment Samples

Biological markers (biomarkers) are compounds such as terpanes, steranes, and steroids that are derived from organisms present in the original biomass from which organic-rich sediments and oils were formed. These compounds can be measured in both oils and source rock bitumens, and they can be used to establish a correlation between an oil sample and the original petroleum source rock. Combined gas chromatography / mass spectrometry (GC/MS) can be used to analyze for biomarkers in oil samples. However, there are numerous interferences present that have the same integer mass as biomarkers, but different elemental compositions. Because these isobaric compounds have different exact masses than the biomarkers, the interferences can be separated by high-resolution mass spectrometry. Some examples of compounds that interfere with the detection of biomarkers are given in Table I.

High Resolution at Low Mass: Separation of H2 + and D+

Most familiar applications of high resolution mass spectrometry relate to exact mass measurements for elemental composition determination of compounds such as natural products, environmental contaminants, petrochemicals and synthetic organic compounds. However, high resolution can also be useful at the very low end of the mass scale for monitoring gases and isotopes. The GCmate has a mass range that extends as low as m/z 1 and as high as m/z 3000 (at reduced accelerating voltage) and is capable of a resolving power up to 5,000. This is more than sufficient for analyzing low-mass species such as CO and N2 as well as H+, D+, H2+, HD+ etc. The example shown above was obtained by monitoring H2+ (m/z 2.01565) and D+ (m/z 2.0141) from a mixture of D2O and H2O at a resolving power of 3400. The difference in mass between these two species is only 0.00155 u.

GC/MS Analysis of an Extract from the JEOL Christmas Tree

A few needles from the holiday tree in the lobby of our Peabody office were extracted with dichloromethane and analyzed with the JEOL GCmate GC/MS system. Components were identified by a library search of the mass spectra. The fragrance comes from a complex mixture of terpenes such as alpha-pinene (familiar pine aroma) and limonene (citrus aroma) and other compounds, such as maltol (fresh-baked bread aroma).

Fast Atom Bombardment Ion Source Option

The GCmate and LCmate benchtop mass spectrometers can be fitted with an optional fast atom bombardment (FAB) ion source that provides a means for rapid and convenient analysis of polar or thermally labile molecules. The FAB source can be operated in positive and negative-ion mode, and it can be used for high-resolution or MS/MS measurements (with the linked scan MS/MS option). The LCmate can be fitted with an optional frit-FAB LC/MS interface, and an auto-probe has also been developed that can allow unattended analysis of up to 40 direct-probe FAB samples at a time. Some examples of FAB analysis with GCmate are shown here.

Chromatographic Enhancement Software - Component Detection for GC/MS and LC/MS

A high chemical background or the continuous introduction of a reference compound can make it difficult to locate and identify trace components in a total ion current chromatogram in a GC/MS or LC/MS experiment. The Shrader System for Windows™ software1 available with the JEOL GCmate, LCmate, and RSVP mass spectrometers provides a solution to this problem based on the Component Detection Algorithm (CODA), developed by Windig et. al.2 The CODA algorithm identifies significant peaks by comparing a smoothed, mean-subtracted reconstructed ion chromatogram (RIC) with the original RIC.

Analysis of Scotch Whiskey and Tequila Samples by Solid-Phase Microextraction and High-Resolution GC/MS

Solid-phase microextraction (SPME) is a convenient sample preparation method for extracting organic compounds from aqueous samples. The combination of SPME with gas chromatography and high-resolution mass spectrometry provides powerful capabilities for the analysis of alcoholic beverages. Two samples of Scotch whiskey and one tequila sample were sampled by using solid-phase microextraction for analysis by high-resolution GC/MS. Sample 1 was a blended 12-year old light Scotch whiskey, while sample 2 was a 12-year old single-malt light Scotch whiskey. The tequila sample was a popular brand that is widely sold in the USA. Compounds were extracted and identified by GC/MS with library search. Exact mass measurements provided elemental compositions for molecular ions and fragment ions.

Analysis of Polychlorinated Biphenyls (PCBs) by High-Resolution Selected Ion Monitoring (HRSIM)

Polychlorinated biphenyl’s (PCBs) have been in use in industry since the early 1900's. These compounds are relatively stable and have properties have led to their use in a variety of applications ranging from electrical insulators to flame retardants. Exposure to PCBs can cause irritation, acne, and rashes. PCBs have demonstrated carcinogenic activity in animal studies. Because of potentially adverse health effects, PCB manufacture was banned in the United States in the 1970's. Because of their stability, PCBs resist degradation and can accumulate in the environment. Quantities of PCBs also exist in transformers and capacitors and hazardous waste sites. Their volatility and thermal stability make PCBs suitable for analysis by GC/MS methods. However, lowresolution mass selected-ion monitoring (LRSIM) is not selective enough to unequivocally identify PCBs in complex mixtures. High-resolution SIM (HRSIM), available with the JEOL GCmate, provides additional selectivity which can greatly simplify the identification of PCBs in complex mixtures and environmental samples.

A Simplified, Low-Cost Analytical Method for Dioxins: GC/MS Analysis of Dioxins with GCmate and a Large-Volume Injector

The Japanese government, through various guidelines and the JIS standard, regulates analytical methods for dioxins from preliminary treatment to data acquisition to data processing. The guidelines specify a high resolution gas chromatograph – high resolution mass spectrometer system (HRGC/HRMS) as a final analytical instrument and a resolution of 10,000 for the mass spectrometer. These methods, however, are quite costly if executed as the government recommends. Since the Law Concerning Special Measures Against Dioxins went into effect in January 2000, dioxin samples to be analyzed are expected to multiply in a few years to come. Researchers are concerned that the high cost of analysis per sample will affect the scope and quality of their studies. As a result, simplified methods for dioxin analysis are in dire need to streamline the analytical process and reduce the cost.

Analytical Instruments Documents

Other Resources

The following resources are available for the JEOL Analytical Instruments:


Corona - Glow Discharge (DART Ion Source)

February 22, 2020