In this report, we performed an end-group analysis of polymer samples with a high polydispersity and molecular weight of less than 50,000 by combining SEC and high-performance MALDI-TOFMS. In particular, we report on (i) improvement of the efficiency of fractionation by SEC and pretreatment for MALDI-TOFMS measurement, (ii) improvement of visualization of end group changes in mass spectra of SEC fractionated samples with reduced polydispersity, (iii) End group analysis in the high molecular weight region (molecular weight 10,000 to 20,000).